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| A draft sequence of the rice genome (Oryza sativa L. ssp indica) |
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| Author(s): Yu J, Hu SN, Wang J, Wong GKS, Li SG, Liu B, Deng YJ, Dai L, Zhou Y, Zhang XQ, Cao ML, Liu J, Sun JD, Tang JB, Chen YJ, Huang XB, Lin W, Ye C, Tong W, Cong LJ, Geng JN, Han YJ, Li L, Li W, Hu GQ, Huang XG, Li WJ, Li J, Liu ZW, Li L, Liu JP, Qi QH, Liu JS, Li L, Li T, Wang XG, Lu H, Wu TT, Zhu M, Ni PX, Han H, Dong W, Ren XY, Feng XL, Cui P, Li XR, Wang H, Xu X, Zhai WX, Xu Z, Zhang JS, He SJ, Zhang JG, Xu JC, Zhang KL, Zheng XW, Dong JH, Zeng WY, Tao L, Ye J, Tan J, Ren XD, Chen XW, He J, Liu DF, Tian W, Tian CG, Xia HG, Bao QY, Li G, Gao H, Cao T, Wang J, Zhao WM, Li P, Chen W, Wang XD, Zhang Y, Hu JF, Wang J, Liu S, Yang J, Zhang GY, Xiong YQ, Li ZJ, Mao L, Zhou CS, Zhu Z, Chen RS, Hao BL, Zheng WM, Chen SY, Guo W, Li GJ, Liu SQ, Tao M, Wang J, Zhu LH, Yuan LP, Yang HM |
| Source: SCIENCE Volume: 296 Issue: 5565 Pages: 79-92 Published: APR 5 2002 |
| Times Cited: 1,169 References: 109 |
| Abstract: We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC-content of rice coding sequences. |
| Document Type: Review |
| Language: English |
| Reprint Address: Yuan, LP (reprint author), Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China |
Addresses:
1. Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China
2. Chinese Acad Sci, Beijing Genom Inst, Ctr Genom & Bioinformat, Beijing 101300, Peoples R China
3. Zhejiang Univ, Hangzhou Genom Inst, Inst Bioinformat, Key Lab Bioinformat Zhejiang Prov, Hangzhou 310007, Peoples R China
4. Univ Washington, Dept Med, Genome Ctr, Seattle, WA 98195 USA
5. Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
6. Xi An Jiao Tong Univ, Coll Med, Xian 710061, Peoples R China
7. Fudan Univ, Shanghai 200433, Peoples R China
8. Natl Hybrid Rice R&D Ctr, Changsha 410125, Peoples R China
9. Chinese Acad Sci, Inst Biophys, Lab Bioinformat, Beijing 100101, Peoples R China
10. Digital China Ltd, Beijing 100080, Peoples R China
11. Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China
12. Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China |
| Publisher: AMER ASSOC ADVANCEMENT SCIENCE, 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA |
| Subject Category: Multidisciplinary Sciences |
| IDS Number: 539FA |
| ISSN: 0036-8075 |
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| | | | | | | | | Record from Web of Science® | | | | | | | | | |