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| STRUCTURES OF TERNARY COMPLEXES OF RAT DNA-POLYMERASE-BETA, A DNA TEMPLATE-PRIMER, AND DDCTP |
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| Author(s): PELLETIER H, SAWAYA MR, KUMAR A, WILSON SH, KRAUT J |
| Source: SCIENCE Volume: 264 Issue: 5167 Pages: 1891-1903 Published: JUN 24 1994 |
| Times Cited: 606 References: 92 |
| Abstract: Two ternary complexes of rat DNA polymerase beta (pol beta), a DNA template-primer, and dideoxycytidine triphosphate (ddCTP) have been determined at 2.9 Angstrom and 3.6 Angstrom resolution, respectively, ddCTP is the triphosphate of dideoxycytidine (ddC), a nucleoside analog that targets the reverse transcriptase of human immunodeficiency virus (HIV) and is at present used to treat AIDS, Although crystals of the two complexes belong to different space groups, the structures are similar, suggesting that the polymerase-DNA-ddCTP interactions are not affected by crystal packing forces. In the pol beta active site, the attacking 3'-OH of the elongating primer, the ddCTP phosphates, and two Mg2+ ions are all clustered around Asp(190), Asp(192), and Asp(256). Two of these residues, Asp(190) and Asp(256), are present in the amino acid sequences of all polymerases so far studied and are also spatially similar in the four polymerases-the Klenow fragment of Escherichia coli DNA polymerase I, HIV-1 reverse transcriptase, T7 RNA polymerase, and rat DNA pol beta-whose crystal structures are now known. A two-metal ion mechanism is described for the nucleotidyl transfer reaction and may apply to all polymerases. In the ternary complex structures analyzed, pol beta binds to the DNA template-primer in a different manner from that recently proposed for other polymerase-DNA models. |
| Document Type: Article |
| Language: English |
| Reprint Address: PELLETIER, H (reprint author), UNIV CALIF SAN DIEGO, DEPT CHEM, LA JOLLA, CA 92093 USA |
Addresses:
1. UNIV TEXAS, MED BRANCH, SEALY CTR MOLEC SCI, GALVESTON, TX 77555 USA |
| Publisher: AMER ASSOC ADVANCEMENT SCIENCE, 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 |
| Subject Category: Multidisciplinary Sciences |
| IDS Number: NT847 |
| ISSN: 0036-8075 |
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